Clustergrammer-Widget based interactive heatmap¶

  • Following interactive heatmap represents the 687 DE proteins between ENRC and ENRI.
  • Under the Type_Where heading, we have summarized the type of cells and its location.

Reference¶

Fernandez, N. F. et al. Clustergrammer, a web-based heatmap visualization and analysis tool for high-dimensional biological data. Sci. Data 4:170151 doi:10.1038/sdata.2017.151 (2017)

In [1]:
import pandas as pd
from clustergrammer_widget import *
net = Network(clustergrammer_widget)
In [2]:
from clustergrammer2 import net

>> clustergrammer2 backend version 0.18.0
In [3]:
# load our data
net.load_file('MG.tsv')
In [4]:
# check shape of data
net.dat['mat'].shape
Out[4]:
(686, 6)
In [5]:
net.cluster(views=[])
In [6]:
net.widget()